BambooBase aims to provide an intuitive user experience for bamboo genomics and systematics. Our curated collection includes 18 genomes, 476 transcriptomes, 16 epigenomes, and taxonomic resources that encompass all 135 currently accepted genera of Bambusoideae. It provides valuable information on subgenome-scale, sequence similarity- and collinearity-based homologous groups and incorporates versatile analytical tools for comparative, evolutionary, and functional analyses. In addition, BambooBase also serves as a comprehensive knowledge base for the Bamboo Phylogeny Group II (BPG II), providing integrated taxonomic information on the 135 bamboo genera, with scientific name, synonym(s), morphological description, geographic distribution and phylogenetic remarks.
guianensis
latifolia
luodianensis
calcarea
latiflorus
glauca
racemiflorum
angustifolia
baccifera
amplexicaulis
edulis
sinicus
How to Cite
If you want to cite this site (https://bamboo.genobank.org/), please refer to the following papers:
1. Yun-Long Liu*, Shu-Yang Gao, Guihua Jin, Meng-yuan Zhou, Qijuan Gao, Cen Guo, Yi-Zhou Yang, Liang-Zhong Niu, Enhua Xia, Zhen-Hua Guo, Peng-Fei Ma*, De-Zhu Li*. BambooBase：A comprehensive database of bamboo omics and systematics. Molecular Plant (Online). doi: https://doi.org/10.1016/j.molp.2024.02.017.
2. Peng-Fei Ma, Yun-Long Liu, Cen Guo, Guihua Jin, Zhen-Hua Guo, Ling Mao, Yi-Zhou Yang, Liang-Zhong Niu, Yu-Jiao Wang, Lynn G. Clark, Elizabeth A. Kellogg, Zu-Chang Xu, Xia-Ying Ye, Jing-Xia Liu, Meng-Yuan Zhou, Yan Luo, Yang Yang, Douglas E. Soltis, Jeffrey L. Bennetzen, Pamela S. Soltis, De-Zhu Li*. Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance. Nature Genetics (2024). doi: https://doi.org/10.1038/s41588-024-01683-0.
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