Open Reading Frame (ORF) Finder
Example Data
Enter Query Sequence
Enter nucleotide sequence in FASTA format:
From:
To:
Choose Search Parameters
Minimal ORF length (nt):
30
75
150
300
600
Genetic code:
1. Standard
2. Vertebrate Mitochondrial
3. Yeast Mitochondrial
4. Mold, Protozoan and Coelenterate Mitochondrial, and the Mycoplasma/Spiroplasma
5. Invertebrate Mitochondrial
6. Ciliate, Dasycladacean and Hexamita Nuclear
9. Echinoderm and Flatworm Mitochondrial
10. Euplotid Nuclear
11. Bacterial, Archaeal and Plant Plastid
12. Alternative Yeast Nuclear
13. Ascidian Mitochondrial
14. Alternative Flatworm Mitochondrial
16. Chlorophycean Mitochondrial
21. Trematode Mitochondrial
22. Scenedesmus obliquus Mitochondrial
23. Thraustochytrium Mitochondrial
24. Pterobranchia Mitochondrial
25. Candidate Division SR1 and Gracilibacteria
26. Pachysolen tannophilus Nuclear
27. Karyorelict Nuclear
28. Condylostoma Nuclear
29. Mesodinium Nuclear
30. Peritrich Nuclear
31. Blastocrithidia Nuclear
ORF start codon to use:
"ATG" only
"ATG" and alternative initiation codons
Any sense codon
Ignore nested ORFs
:
